Note to self: When you choose to redirect the Application Data folder the certificate store folders are NOT redirected. They will reside in the default folder. Personal Certificates are stored under following locations: %userprofile%\AppData\Roaming\Microsoft\SystemCertificates%userprofile%\AppData\Roaming\Microsoft\Protect%userprofile%\AppData\Roaming\Microsoft\Credentials%userprofile%\AppData\Roaming\Microsoft\Crypto%userprofile%\AppData\Roaming\Microsoft\CLR Security Config%userprofile%\AppData\Roaming\Microsoft\CryptNetUrlCache HKEY_CURRENT_USER\Software\Microsoft\CryptographyHKEY_CURRENT_USER\Software\Microsoft\Protected Storage System ProviderHKEY_CURRENT_USER\Software\Microsoft\SystemCertificates